We received the question via mail as well and answered this:
The change between LsPush 6.0.0.1 and 6.0.0.2 is minimal. It is only related to the user interface of LsPush. We could not reproduce the issue so far. Possibly it occurs because the desktop was not opened yet at the time when your logon script gets executed and LsPush tries to center its UI to the logged on user's desktop.
Could you download LsPush 6.0.0.1 from
here and replace the executable you are using with the old one. The scanning procedure is identical between both versions. If we could reproduce the issue, we will update LsPush in one of the future Lansweeper releases.